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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93694257_93694739_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93694257 - 93694739
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
GTTTGGTTAATT
Flanking Amino Acid:
HLWKQSSVNKKEWTPDVVIS
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
81.4
0.71
0.8
76.8
37.1
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
55
0.24
2.4
80.32
42.1

Associated Gene:

Gene:
ELP2
Ensembl Gene ID:
ENSAPLG00000008710
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009080
93677253 - 93709971
32719