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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93694872_93696055_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93694872 - 93696055
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTCTGTTAATT
Flanking Amino Acid:
DKESGVWLEQVRVGEVGGNT
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.7
92.8
13.3
Major BPS
100
1.24
0.5
100
0
Major PPT
76.7
0.6
1
74.5
39.2
Minor 5ss
23.6
-3
3.9
35.5
41.2
Minor BPS
56.4
0.28
2.1
76.4
40.9

Associated Gene:

Gene:
ELP2
Ensembl Gene ID:
ENSAPLG00000008710
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009080
93677253 - 93709971
32719