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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93696157_93698023_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93696157 - 93698023
Intron Length:
1867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCAA
5'SS Class:
major
3'SS Sequence:
TCTTGTACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCTTGTACT
Flanking Amino Acid:
AVHWQPSFTKGGSIQQPMRI
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
67.5
39.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76
0.59
0.8
70.8
34.7
Minor 5ss
36.5
-1.5
3.1
47
48.3
Minor BPS
67.5
0.63
1.8
88.92
35.6

Associated Gene:

Gene:
ELP2
Ensembl Gene ID:
ENSAPLG00000008710
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009080
93677253 - 93709971
32719