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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93698120_93699042_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93698120 - 93699042
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACC
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTTTCTCTGATT
Flanking Amino Acid:
RLKENVFTVKDTGTTYAVTL
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
78.8
35.5
Major BPS
70
0.5
1
67
39.8
Major PPT
68.8
0.42
1
65.6
40.9
Minor 5ss
35.6
-1.6
2.9
46
42.3
Minor BPS
67.9
0.65
1.6
87.59
31.4

Associated Gene:

Gene:
ELP2
Ensembl Gene ID:
ENSAPLG00000008710
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009080
93677253 - 93709971
32719