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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93699178_93700107_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93699178 - 93700107
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTCAGTATG
5'SS Class:
major
3'SS Sequence:
TTTAACCAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AACTCTTTAATT
Flanking Amino Acid:
WIRSIEWAVCDEDLFLASCA
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
74.5
41.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
61.3
0.26
1
56.5
38.7
Minor 5ss
34.9
-1.7
2.7
40.3
39.5
Minor BPS
74.2
0.84
1.1
79.18
37.3

Associated Gene:

Gene:
ELP2
Ensembl Gene ID:
ENSAPLG00000008710
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009080
93677253 - 93709971
32719