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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93700175_93703476_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93700175 - 93703476
Intron Length:
3302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCATA
5'SS Class:
strong_major
3'SS Sequence:
AAATTTTATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGACCT
Flanking Amino Acid:
IHLFIQQSSQFQKTLILPGH
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
79.9
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.5
0.53
1
70.9
43.5
Minor 5ss
43
-0.8
2.9
57.8
46.4
Minor BPS
54.4
0.22
2
81.73
39.5

Associated Gene:

Gene:
ELP2
Ensembl Gene ID:
ENSAPLG00000008710
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009080
93677253 - 93709971
32719