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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93739706_93761471_R

Intron Information:

Intron Rank:
153749
Intron Class:
major
Intron Phase:
Intron Coordinates:
93739706 - 93761471
Intron Length:
21766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ACATGCTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71
35.5
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
85.3
0.8
0.7
80.7
30.7
Minor 5ss
36.6
-1.5
3.1
46.6
48.7
Minor BPS
48.5
-0
2
65.66
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030210
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037943
93739500 - 93762058
22559