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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93742516_93761471_R

Intron Information:

Intron Rank:
153747
Intron Class:
major
Intron Phase:
Intron Coordinates:
93742516 - 93761471
Intron Length:
18956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCTTGTTCTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71
35.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
85.7
0.8
0.8
79.9
32.2
Minor 5ss
36.6
-1.5
3.1
46.6
48.7
Minor BPS
46.3
-0.2
2.2
62.97
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030210
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019498
93742473 - 93762058
19586