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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93764268_93780660_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93764268 - 93780660
Intron Length:
16393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCCC
5'SS Class:
major
3'SS Sequence:
TACTTGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TAACTCTTACTT
Flanking Amino Acid:
EQTLVPLVSQITTLINHKDK
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
57.2
38.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.6
0.62
0.9
71.7
37.9
Minor 5ss
30
-2.3
3.5
42.1
44.9
Minor BPS
57
0.3
1.6
71.1
39.9

Associated Gene:

Gene:
CTNNAL1
Ensembl Gene ID:
ENSAPLG00000008830
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019459
93763255 - 93816372
53118