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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93780851_93785720_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93780851 - 93785720
Intron Length:
4870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTCCTTATAG
Flanking Amino Acid:
SVACIEARRAGETIAQLTDV
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
89.3
0.88
0.6
85
22.8
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
69.3
0.47
1.8
76.89
40.3

Associated Gene:

Gene:
CTNNAL1
Ensembl Gene ID:
ENSAPLG00000008830
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019459
93763255 - 93816372
53118
ENSAPLT00000009217
93779424 - 93816372
36949