Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93789018_93790815_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

93789018 - 93790815

Intron Length:

1798

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGGTGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TAATTTTTATTT

Flanking Amino Acid:

FAHLTGDRQNDLKDEKKKAR

Intron Amino Acid Position:

169

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

92.9

22.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.56

73.5

41.9

Minor 5ss

44.1

-0.6

2.9

65.1

39.1

Minor BPS

59.6

0.38

1.5

73.17

38.2

Associated Gene:

Gene:

CTNNAL1

Ensembl Gene ID:

ENSAPLG00000008830

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009217

93779424 - 93816372

36949

ENSAPLT00000019459

93763255 - 93816372

53118