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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93811390_93812748_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93811390 - 93812748
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATG
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTGTTTTCATT
Flanking Amino Acid:
SMAYSMYLFTRGEGLLKTTQ
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.7
34.8
Major BPS
100
1.24
0.5
100
0
Major PPT
78.8
0.65
0.9
73
36.8
Minor 5ss
39.4
-1.2
2.8
51.2
45.3
Minor BPS
50.4
0.09
1.8
69.97
42.5

Associated Gene:

Gene:
CTNNAL1
Ensembl Gene ID:
ENSAPLG00000008830
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019459
93763255 - 93816372
53118
ENSAPLT00000009217
93779424 - 93816372
36949