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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93813689_93813824_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93813689 - 93813824
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGTAT
5'SS Class:
major
3'SS Sequence:
AAACATACTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTCTTAAAAC
Flanking Amino Acid:
ASAFQAFSDQIHNDDKPLLL
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
73.6
32.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
62.3
0.28
1
56.5
43.1
Minor 5ss
33
-1.9
3.3
46.5
48.8
Minor BPS
60.6
0.31
1.8
70.99
40.7

Associated Gene:

Gene:
CTNNAL1
Ensembl Gene ID:
ENSAPLG00000008830
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009217
93779424 - 93816372
36949
ENSAPLT00000019459
93763255 - 93816372
53118