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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93817857_93817927_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93817857 - 93817927
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
ACTACTTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
CTGACTCTAACT
Flanking Amino Acid:
STDGEEYTIYSCIRGRLIEV
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
79.3
0.66
0.9
72.3
37.1
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
56.6
0.28
1.8
73.09
43.8

Associated Gene:

Gene:
ABITRAM
Ensembl Gene ID:
ENSAPLG00000027536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046763
93817590 - 93820339
2750