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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93818005_93818742_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93818005 - 93818742
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTCTT
5'SS Class:
major
3'SS Sequence:
TTTTCAAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAAAT
Flanking Amino Acid:
QNKVSGKSKRGAQFLTELAP
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.7
44.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.3
0.61
0.9
71.9
37.2
Minor 5ss
38.3
-1.3
3.4
50
46.3
Minor BPS
59.2
0.37
1.6
76.7
40.1

Associated Gene:

Gene:
ABITRAM
Ensembl Gene ID:
ENSAPLG00000027536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046763
93817590 - 93820339
2750