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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93818873_93820135_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93818873 - 93820135
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATAATTATAACT
Flanking Amino Acid:
EDFCVLQHSNRICVITLAEA
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.9
82.7
29.3
Major BPS
80
0.75
1
78.6
31
Major PPT
82.9
0.74
0.8
77
30.9
Minor 5ss
17.3
-3.8
3.5
25.7
37
Minor BPS
55.1
0.24
1.6
72.73
37.7

Associated Gene:

Gene:
ABITRAM
Ensembl Gene ID:
ENSAPLG00000027536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046763
93817590 - 93820339
2750