About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93820188_93820275_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93820188 - 93820275
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGCGGG
5'SS Class:
major
3'SS Sequence:
TGGCCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
GCCGCCTCACCC
Flanking Amino Acid:
ARYFTRWYKPDVKGRPCEDF
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
54.2
45
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
76
0.58
0.9
69.4
36.8
Minor 5ss
29.2
-2.4
3.4
37.8
47
Minor BPS
45.4
-0.3
1.9
50.68
46.1

Associated Gene:

Gene:
ABITRAM
Ensembl Gene ID:
ENSAPLG00000027536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046763
93817590 - 93820339
2750