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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93827765_93831347_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93827765 - 93831347
Intron Length:
3583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTCCTTTTCATA
Flanking Amino Acid:
LHNFSDGLAIGAAFTEGLSS
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
91.2
27.5
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
82.6
0.73
0.7
79.3
26.3
Minor 5ss
42.1
-0.9
2.9
61.3
43
Minor BPS
50
-0
1.7
63.33
38

Associated Gene:

Gene:
SLC39A6
Ensembl Gene ID:
ENSAPLG00000009318
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043796
93824645 - 93839030
14386
ENSAPLT00000009699
93824692 - 93839030
14339