About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93831726_93833056_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93831726 - 93833056
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
GTTTTTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
GTTTTTGTAACA
Flanking Amino Acid:
ANEEKLDTDDRSEGYLGTDS
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
68.8
42.2
Major BPS
79
0.72
1
78.4
31.2
Major PPT
77.4
0.62
1
73.3
40.9
Minor 5ss
40.3
-1.1
3
54.3
37
Minor BPS
60.6
0.33
2
75.16
36.6

Associated Gene:

Gene:
SLC39A6
Ensembl Gene ID:
ENSAPLG00000009318
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009699
93824692 - 93839030
14339