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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93833127_93834472_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
93833127 - 93834472
Intron Length:
1346

Sequence Information:

Terminal Dinucleotides:
GT-GA
5'SS Sequence:
AAG|GTATAACTA
5'SS Class:
major
3'SS Sequence:
TTTTGGAATAAGA|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATATTCATAACT
Flanking Amino Acid:
IKQFKDKKKKKKNEDDGESK
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
66.7
38.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
19.3
-1.7
4.1
45.7
44.3
Minor 5ss
41
-1
3.2
56.3
47.8
Minor BPS
69.1
0.68
1.6
84.27
35.6

Associated Gene:

Gene:
SLC39A6
Ensembl Gene ID:
ENSAPLG00000009318
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009699
93824692 - 93839030
14339