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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93836084_93836370_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93836084 - 93836370
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTACCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTGTTTACCA
Flanking Amino Acid:
TPPKGYSLQIAWIGGFISIS
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
35
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.7
0.76
0.9
78
40.1
Minor 5ss
40.1
-1.1
3
53.2
44.1
Minor BPS
61.5
0.36
2
78.6
38.6

Associated Gene:

Gene:
SLC39A6
Ensembl Gene ID:
ENSAPLG00000009318
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043796
93824645 - 93839030
14386
ENSAPLT00000009699
93824692 - 93839030
14339