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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_938743_939706_R

Intron Information:

Intron Rank:
145740
Intron Class:
major
Intron Phase:
Intron Coordinates:
938743 - 939706
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAGGTATC
5'SS Class:
major
3'SS Sequence:
TTCTTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTTATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
69.5
41.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
86.1
0.81
0.7
85.4
28.1
Minor 5ss
41.8
-0.9
3.2
63.7
40.8
Minor BPS
71.8
0.76
1.5
86.09
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035849
932480 - 940528
8049