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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_93985600_93999081_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93985600 - 93999081
Intron Length:
13482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCAATTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTTCAATTACCA
Flanking Amino Acid:
AECDEDAENVGCVCNIDCSG
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
74.7
0.56
1
67.4
42.4
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
49.9
-0
2
71.45
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009426
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040668
93888023 - 94012258
124236
ENSAPLT00000009874
93888023 - 94011441
123419