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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94009739_94011419_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94009739 - 94011419
Intron Length:
1681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTAAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TTTTTCTAAACA
Flanking Amino Acid:
IIVAIVMCITRKCPKKQ*
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
80.8
0.69
0.9
78.3
34
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
76.3
0.82
1.6
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009426
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009874
93888023 - 94011441
123419
ENSAPLT00000040668
93888023 - 94012258
124236