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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94029287_94030627_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94029287 - 94030627
Intron Length:
1341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTAATGTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTCTATTTAATG
Flanking Amino Acid:
NSKLVESAPKVLFTSLPVVH
Intron Amino Acid Position:
2378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.8
0.58
1
73.1
41.7
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
59.1
0.15
1.6
60.65
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009683
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045742
94029068 - 94111475
82408
ENSAPLT00000010146
94029068 - 94112558
83491