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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94035951_94043594_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94035951 - 94043594
Intron Length:
7644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ACTTATCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTACTTATCT
Flanking Amino Acid:
TLTDLKLAIDGTIIMSEELR
Intron Amino Acid Position:
2234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
72.3
37.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
79.5
0.66
0.9
70
40.5
Minor 5ss
33.2
-1.9
3.2
40.6
40.8
Minor BPS
73.7
0.82
1.7
93.25
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009683
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045742
94029068 - 94111475
82408
ENSAPLT00000010146
94029068 - 94112558
83491