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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94066192_94067361_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94066192 - 94067361
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTATACA
Flanking Amino Acid:
SHNEFETLIKGGASLDLNSV
Intron Amino Acid Position:
1735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
67.6
0.55
2
83.52
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009683
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045742
94029068 - 94111475
82408
ENSAPLT00000010146
94029068 - 94112558
83491