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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94081555_94088232_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94081555 - 94088232
Intron Length:
6678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAT
5'SS Class:
major
3'SS Sequence:
AAAATGCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTTACTTCAAAA
Flanking Amino Acid:
GINKEVLPLKANLALQEGRL
Intron Amino Acid Position:
1242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
72.5
38.4
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
60.1
0.23
1
51.9
42.7
Minor 5ss
42
-0.9
2.8
58.7
45.8
Minor BPS
60.5
0.33
1.7
73.97
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009683
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045742
94029068 - 94111475
82408
ENSAPLT00000010146
94029068 - 94112558
83491