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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94088401_94090849_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94088401 - 94090849
Intron Length:
2449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTCCATTGACT
Flanking Amino Acid:
FLSMLLSFQKDSITGETVEL
Intron Amino Acid Position:
1186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
64
0.32
1
58.7
41.6
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
72.6
0.79
1.6
90.63
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009683
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045742
94029068 - 94111475
82408
ENSAPLT00000010146
94029068 - 94112558
83491