Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94098708_94099706_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

94098708 - 94099706

Intron Length:

999

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAGGA

5'SS Class:

strong_major

3'SS Sequence:

GTGGGAATACTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TACTTAA

U12 Branch Point Sequence:

GTGGGAATACTA

Flanking Amino Acid:

MPVINEWGDQITNEIVRQLM

Intron Amino Acid Position:

487

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

68.5

36.7

Major BPS

74.4

0.61

0.9

63.9

34.9

Major PPT

49.3

-0

1.1

38.2

43.5

Minor 5ss

29.1

-2.4

3.4

38.8

46.3

Minor BPS

34.1

-1.2

2.1

41.55

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009683

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045742

94029068 - 94111475

82408

ENSAPLT00000010146

94029068 - 94112558

83491