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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94103608_94103703_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94103608 - 94103703
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATAAG
5'SS Class:
major
3'SS Sequence:
CATCTGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAC
U12 Branch Point Sequence:
CATGTTGCATCT
Flanking Amino Acid:
YIKQAIDLLQGLLSDRDEKQ
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
71.2
40.6
Major BPS
67.1
0.43
1.2
69.3
37.7
Major PPT
79
0.65
0.9
72.5
37.3
Minor 5ss
33
-1.9
3
41.1
45.5
Minor BPS
37
-0.9
2.2
51.83
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009683
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010146
94029068 - 94112558
83491