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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94103794_94108211_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94103794 - 94108211
Intron Length:
4418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAAT
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
GATTCCTTAAGT
Flanking Amino Acid:
LWNCFNTVFQDMINFVFSSV
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
80
34.7
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
36.4
-1.5
3
51.3
45.2
Minor BPS
75.7
0.88
1.6
86.27
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009683
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045742
94029068 - 94111475
82408
ENSAPLT00000010146
94029068 - 94112558
83491