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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94183599_94185061_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94183599 - 94185061
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTAA
5'SS Class:
strong_major
3'SS Sequence:
GCATTTGCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTCTTCTTATCT
Flanking Amino Acid:
AVENLKNIFSVPEIVRETQD
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73
34.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73
0.52
1
69.4
41.5
Minor 5ss
43.2
-0.7
2.9
55.8
48.3
Minor BPS
66
0.58
1.6
78.81
43.9

Associated Gene:

Gene:
EXOC3
Ensembl Gene ID:
ENSAPLG00000010055
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010484
94179369 - 94199603
20235