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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94185744_94186790_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94185744 - 94186790
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTCTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTGGTCTTAAAG
Flanking Amino Acid:
LLTWVLNTYKSYPSALSPES
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.6
33.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
71.7
0.49
1.1
71.2
38.9
Minor 5ss
38
-1.4
3.2
50.9
45.8
Minor BPS
60.6
0.19
1.6
63.83
44.2

Associated Gene:

Gene:
EXOC3
Ensembl Gene ID:
ENSAPLG00000010055
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010484
94179369 - 94199603
20235