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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94186891_94192164_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94186891 - 94192164
Intron Length:
5274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTAGTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTACGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACGT
Flanking Amino Acid:
PVFFSRKDKEMFEQNLQVAA
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1
70.6
35.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.2
0.75
0.8
81.6
29.2
Minor 5ss
42.7
-0.8
3.4
63.6
48.1
Minor BPS
60.8
0.42
1.9
82.56
39.6

Associated Gene:

Gene:
EXOC3
Ensembl Gene ID:
ENSAPLG00000010055
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010484
94179369 - 94199603
20235