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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94192266_94193083_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94192266 - 94193083
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
GTGTATGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
TGGTTTATGACA
Flanking Amino Acid:
CLQQMNSFLTRYKDEAQLYK
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
72.6
0.51
1
65.5
45.1
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
51.4
0.04
1.6
63.09
37.2

Associated Gene:

Gene:
EXOC3
Ensembl Gene ID:
ENSAPLG00000010055
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010484
94179369 - 94199603
20235