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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94193195_94193909_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94193195 - 94193909
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTATTTGTCACA
Flanking Amino Acid:
IAVINNCQTFKESIISLKRK
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80.7
0.69
0.9
76
37.8
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
47.2
-0.2
2.3
66.93
40.2

Associated Gene:

Gene:
EXOC3
Ensembl Gene ID:
ENSAPLG00000010055
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010484
94179369 - 94199603
20235