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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94194061_94195289_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94194061 - 94195289
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGAACT
5'SS Class:
major
3'SS Sequence:
GTTGTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATCAATT
Flanking Amino Acid:
LLDEVFMDLETHLNELMTKK
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
70.2
40
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.5
0.73
0.8
80.5
37
Minor 5ss
31.1
-2.2
3.1
41.9
44.4
Minor BPS
62.3
0.47
1.8
81.49
40.3

Associated Gene:

Gene:
EXOC3
Ensembl Gene ID:
ENSAPLG00000010055
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010484
94179369 - 94199603
20235