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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94195413_94197817_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94195413 - 94197817
Intron Length:
2405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
CTTGCATAAACC
Flanking Amino Acid:
FAKIKKPYKKTMTVEAHRRV
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75
35.3
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
93.6
0.98
0.6
92.3
18
Minor 5ss
31.6
-2.1
3.3
41.1
45.4
Minor BPS
50.7
0
2.1
67.13
44.6

Associated Gene:

Gene:
EXOC3
Ensembl Gene ID:
ENSAPLG00000010055
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010484
94179369 - 94199603
20235