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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94197980_94198863_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94197980 - 94198863
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTCATCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTAGTTATTT
Flanking Amino Acid:
FRFLFKKIAAGSGEDTEGLC
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
100
1.24
0.5
100
0
Major PPT
82.5
0.73
0.7
77.7
30.6
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
50.5
0.09
2.4
80.67
41.5

Associated Gene:

Gene:
EXOC3
Ensembl Gene ID:
ENSAPLG00000010055
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010484
94179369 - 94199603
20235