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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94198992_94199431_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94198992 - 94199431
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CAGCTTTTACCT
Flanking Amino Acid:
STLVSKYPDIRDDHIAALLT
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
87
0.83
0.8
88.4
28.7
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
49.1
0.01
1.6
61.36
43

Associated Gene:

Gene:
EXOC3
Ensembl Gene ID:
ENSAPLG00000010055
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010484
94179369 - 94199603
20235