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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94202432_94204891_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94202432 - 94204891
Intron Length:
2460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACCAA
U12 Branch Point Sequence:
ACTAAGTGAATT
Flanking Amino Acid:
DTELQQALSNGTWTPFNPAT
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
56.4
0.16
1.3
67.1
39.2
Major PPT
86.2
0.81
0.8
84.1
30.8
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
43.2
-0.4
2.2
60.99
42.7

Associated Gene:

Gene:
PDCD6
Ensembl Gene ID:
ENSAPLG00000013444
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014011
94200630 - 94207919
7290