About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94202432_94206362_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94202432 - 94206362
Intron Length:
3931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGCATTTTAAAG
Flanking Amino Acid:
DTELQQALSNGYRLSDQFYD
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.8
0.56
1
74.4
34.1
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
48.6
-0.2
1.5
47.92
39.3

Associated Gene:

Gene:
PDCD6
Ensembl Gene ID:
ENSAPLG00000013444
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038701
94200630 - 94207919
7290