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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94204937_94205755_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94204937 - 94205755
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TAAGGTTTTACA
Flanking Amino Acid:
FNPATVRSILGMFDRENKGG
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
72.8
0.57
1
81
30.3
Major PPT
86.2
0.81
0.8
84.1
30.8
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
45.5
-0.3
2.1
56.63
42.9

Associated Gene:

Gene:
PDCD6
Ensembl Gene ID:
ENSAPLG00000013444
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014011
94200630 - 94207919
7290