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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94205915_94206362_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94205915 - 94206362
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTCAT
5'SS Class:
major
3'SS Sequence:
TCTCTTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGCATTTTAAAG
Flanking Amino Acid:
HELKQALTGFGYRLSDQFYD
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.8
0.56
1
74.4
34.1
Minor 5ss
36.1
-1.6
3
47.2
42.5
Minor BPS
48.6
-0.2
1.5
47.92
39.3

Associated Gene:

Gene:
PDCD6
Ensembl Gene ID:
ENSAPLG00000013444
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014011
94200630 - 94207919
7290