Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94219748_94224426_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

94219748 - 94224426

Intron Length:

4679

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

TTTAATTTTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTCTTTTTAATT

Flanking Amino Acid:

IEGYIRPSTSSPSKKKARWE

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.85

0.9

86.1

24.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

81.4

0.71

0.8

73.9

41.2

Minor 5ss

46.2

-0.4

2.8

62.8

Minor BPS

0.96

86.64

33.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018399

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036283

94212876 - 94234818

21943

ENSAPLT00000021435

94212876 - 94242906

30031