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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94225777_94227680_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94225777 - 94227680
Intron Length:
1904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
ATGTTTGTAACT
Flanking Amino Acid:
NDPKREEPLVGLEHVVEIRF
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
71.4
0.53
1
67
39.8
Major PPT
88.7
0.87
0.7
83.2
31.9
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
57.9
0.32
2
77.17
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018399
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036283
94212876 - 94234818
21943
ENSAPLT00000021435
94212876 - 94242906
30031