Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94227759_94229384_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

94227759 - 94229384

Intron Length:

1626

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCTGAA

5'SS Class:

major

3'SS Sequence:

TTTTTTATCTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTTTTTTATCT

Flanking Amino Acid:

TPTKYETQRPVKRGLTKDIT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.2

68.5

38.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

89.8

0.9

0.7

89.4

25.6

Minor 5ss

36.1

-1.6

3.4

48.5

47.7

Minor BPS

70.1

0.71

1.5

85.55

34.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018399

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036283

94212876 - 94234818

21943

ENSAPLT00000021435

94212876 - 94242906

30031