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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94241927_94242830_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94241927 - 94242830
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
GTGCTTTCAACT
Flanking Amino Acid:
EPEKKIYYCEVCKVPCMSSI
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
84
0.76
0.7
77
31.7
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
55.3
0.24
1.5
69.99
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018399
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021435
94212876 - 94242906
30031