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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94251372_94253990_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94251372 - 94253990
Intron Length:
2619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTATTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TGTTATTGAAAG
Flanking Amino Acid:
EYVLAQQQMLKEEDEQLKIP
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
61.2
0.25
1.2
63.4
41.3
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
49.5
-0.1
1.8
59.71
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013653
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014237
94250252 - 94337178
86927